DNA barcoding analysis for the difference between Eleutheronema tetradactylum and Eleutheronema rhadinum and their SCAR specific marker development[J]. Acta Scientiarum Naturalium Universitatis SunYatseni, 2019,58(4):60-67.
DNA barcoding analysis for the difference between Eleutheronema tetradactylum and Eleutheronema rhadinum and their SCAR specific marker development[J]. Acta Scientiarum Naturalium Universitatis SunYatseni, 2019,58(4):60-67. DOI: 10.13471/j.cnki.acta.snus.2019.04.006.
The morphological characteristics of the Polynemid fish species distributed in the China Sea are very similar
which can easily lead to classification confusion In this study
we applied DNA barcode technology to analyze the genetic differences between
Eleutheronema tetradactylum
and its related species
Eleutheronema rhadinum
. Mitochondrial COI sequences were obtained from four samples of each species. Among the 655 bp sequences
87 sites were variable. The nucleotide diversity was 0.132 82
and the sequence homology was 93.34%. Moreover,the genetic distance based on the kimura 2parameter model is 0.151
larger than minimum species distance of 0.02. Neighbor-joining phylogenetic analysis revealed that
E. tetradactylum
and
E. rhadinum
are two different but closely related species from the same genus. Using ten random primers
we obtained some specific fragments
and then converted one of them (about 1 300 bp in length
amplified by primer S4) to SCAR marker. Two SCAR markers
SCAR1 (469 bp fragment
62 ℃ annealing temperature) and SCAR5 (606 bp
56 ℃)
were obtained successfully for the species identification of
E. tetradactylum
and its related species. This study would provide technical support for the genetic background research and germplasm conservation of the Polynemid fish species.