纸质出版日期:2010,
网络出版日期:2010-11-25
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利用支持向量机(SVM)技术构建Par-4关联的蛋白质相互作用网络,预测出与Par-4有相互作用的蛋白质82个;这些蛋白质按照功能划分为8大类,主要包括:蛋白激酶、泛素化蛋白酶、死亡受体相关因子、与细胞周期或DNA复制相关蛋白质、调节蛋白质、与疾病相关蛋白质、具有特定结构域结合蛋白质和其他蛋白质等。结合文献挖掘和数据库检索信息,推断出了Par-4的2条可能新的信号转导途径。首次预测到Par-4与一大类泛素化蛋白有密切的关系。研究发现,Par-4与多种蛋白质具有复杂的相互作用,并且,在多个细胞凋亡途径中扮演了重要角色。
Based on the Support Vector Machine algorithm, the proteinprotein interactions (PPI) networks between Par-4, the cancerrelated apoptosis protein, and related proteins have been built. There are 82 proteins have been predicted interacting with Par-4. The proteins are classified into eight groups by biological functions, which include protein kinase, death receptor associate factor, ubiquitinprotein ligase, special disease associate proteins, DNA replication related proteins, special structure associate protein, regulatory protein and others. Combined with literatures mining and molecular chaperones of Par-4 searching from BOND database, two new signal transduction pathways of Par-4 have been deduced. In this paper, we first discover that Par-4 interacts with a group of ubiquitinproteins. We find that Par-4 has complicated interactions with many proteins. Par-4 plays a major role in some apoptosis pathways.
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